Fri, 03 May 2024 13:33:23 -0500
Change title
34
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Reduce dependencies; separate Stats from PlotResults (disabled by default to avoid heavy deps)
Tuomo Valkonen <tuomov@iki.fi>
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1 | __precompile__() |
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2 | |
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3 | module Stats |
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4 | |
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5 | |
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6 | ######################## |
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7 | # Load external modules |
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8 | ######################## |
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9 | |
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10 | using CSV, DataFrames |
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11 | using Statistics |
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12 | |
41 | 13 | export calculate_statistics, |
14 | extract_parameters | |
15 | ||
16 | function extract_parameters(filename :: String) | |
17 | # Extracting parameters | |
18 | params_line = readlines(filename)[1] | |
19 | ||
20 | # Split the line by commas and trim each part | |
21 | params_parts = map(strip, split(params_line, ',')) | |
22 | ||
23 | # Initialize variables to store parameter values | |
24 | α_value, τ₀_value, σ₀_value = missing, missing, missing | |
25 | ||
26 | # Look for specific substrings to identify the values of α, τ₀, and σ₀ | |
27 | for param_part in params_parts | |
28 | if contains(param_part, "α = ") | |
29 | α_value = parse(Float64, split(param_part, '=')[2]) | |
30 | elseif contains(param_part, "τ₀ = ") | |
31 | τ₀_value = parse(Float64, split(param_part, '=')[2]) | |
32 | elseif contains(param_part, "σ₀ = ") | |
33 | σ₀_value = parse(Float64, split(param_part, '=')[2]) | |
34 | end | |
35 | end | |
36 | ||
37 | # Assign the values to α, τ₀, and σ₀ | |
38 | α = α_value | |
39 | τ₀ = τ₀_value | |
40 | σ₀ = σ₀_value | |
41 | return α, τ₀, σ₀ | |
42 | end | |
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43 | |
44 | 44 | const default_imnames = ("lighthouse200x300", "shepplogan256x256", "brainphantom256x256") |
47
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45 | const default_algnames = ("dualscaling", "greedy","noprediction","primalonly","proximal","rotation","zerodual","activateddual") |
44 | 46 | |
47 | function calculate_statistics(;imnames=default_imnames, | |
48 | algnames=default_algnames, | |
49 | csv_path = "./img/summarystats.csv") | |
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50 | mystart = 41 # Corresponds to the 500th iterate |
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51 | |
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52 | # Define an array to store results |
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53 | results = DataFrame(experiment = String[], α = Float64[], algorithm = String[], psnr_mean1 = Float64[], psnr_mean500 = Float64[], psnr_ci = String[], ssim_mean1 = Float64[], ssim_mean500 = Float64[], ssim_ci = String[]) |
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54 | |
44 | 55 | for imname in imnames |
56 | for algname in algnames | |
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57 | directory_path = "./img/" |
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58 | files = readdir(directory_path) |
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59 | filtered_files = filter(file -> startswith(file, "$(imname)_pdps_known_$(algname)") && endswith(file, ".txt"), files) |
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60 | |
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61 | for file in filtered_files |
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62 | filename = directory_path * file |
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63 | data = CSV.File(filename, delim='\t', header=2) |> DataFrame |
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64 | |
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65 | # Extract α from filename |
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66 | α, _, _ = extract_parameters(filename) |
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67 | |
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68 | |
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69 | # Extract SSIM and PSNR columns starting from 1st iteration |
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70 | ssim_values1 = Float64.(data[:, :ssim]) |
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71 | psnr_values1 = Float64.(data[:, :psnr]) |
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72 | |
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73 | # Extract SSIM and PSNR columns starting from 500th iteration |
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74 | ssim_values500 = Float64.(data[mystart:end, :ssim]) |
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75 | psnr_values500 = Float64.(data[mystart:end, :psnr]) |
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76 | |
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77 | # Calculate mean and confidence intervals |
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78 | ssim_mean1 = round(mean(ssim_values1), digits=4) |
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79 | psnr_mean1 = round(mean(psnr_values1), digits=4) |
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80 | |
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81 | ssim_mean500 = round(mean(ssim_values500), digits=4) |
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82 | psnr_mean500 = round(mean(psnr_values500), digits=4) |
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83 | ssim_std500 = round(std(ssim_values500), digits=4) |
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84 | psnr_std500 = round(std(psnr_values500), digits=4) |
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85 | n = length(ssim_values500) |
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86 | |
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87 | ssim_ci_lower = round(ssim_mean500 - 1.96 * ssim_std500 / sqrt(n), digits=4) |
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88 | ssim_ci_upper = round(ssim_mean500 + 1.96 * ssim_std500 / sqrt(n), digits=4) |
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89 | psnr_ci_lower = round(psnr_mean500 - 1.96 * psnr_std500 / sqrt(n), digits=4) |
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90 | psnr_ci_upper = round(psnr_mean500 + 1.96 * psnr_std500 / sqrt(n), digits=4) |
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91 | |
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92 | ssim_ci = "$(ssim_ci_lower) - $(ssim_ci_upper)" |
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93 | psnr_ci = "$(psnr_ci_lower) - $(psnr_ci_upper)" |
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94 | experiment = "$(imname)" |
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95 | algorithm = "$(algname)" |
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96 | |
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97 | # Append results to DataFrame |
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98 | push!(results, (experiment, α, algorithm, psnr_mean1, psnr_mean500, psnr_ci, ssim_mean1, ssim_mean500, ssim_ci)) |
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99 | end |
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100 | end |
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101 | end |
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102 | sort!(results, [:experiment, :α, :algorithm]) |
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103 | if isfile(csv_path) |
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104 | rm(csv_path) |
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105 | end |
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106 | CSV.write(csv_path, results) |
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107 | end |
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108 | |
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109 | end |