Fri, 08 Jan 2021 15:54:35 -0500
Rename TestDenoise to Tests
DenoiseTest/Manifest.toml | file | annotate | diff | comparison | revisions | |
DenoiseTest/Project.toml | file | annotate | diff | comparison | revisions | |
DenoiseTest/src/DenoiseTest.jl | file | annotate | diff | comparison | revisions | |
README.md | file | annotate | diff | comparison | revisions | |
Tests/Manifest.toml | file | annotate | diff | comparison | revisions | |
Tests/Project.toml | file | annotate | diff | comparison | revisions | |
Tests/src/Tests.jl | file | annotate | diff | comparison | revisions |
--- a/DenoiseTest/Manifest.toml Fri Jan 08 12:32:09 2021 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,789 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -[[AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "8ed9de2f1b1a9b1dee48582ad477c6e67b83eb2c" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.0.0" - -[[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "345a14764e43fe927d6f5c250fe4c8e4664e6ee8" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "2.4.0" - -[[AlgTools]] -deps = ["DelimitedFiles", "Printf"] -path = "../../AlgTools" -uuid = "c46e2e78-5339-41fd-a966-983ff60ab8e7" -version = "0.1.0" - -[[Artifacts]] -deps = ["Pkg"] -git-tree-sha1 = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744" -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" -version = "1.3.0" - -[[AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "f31f50712cbdf40ee8287f0443b57503e34122ef" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.3" - 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--- a/DenoiseTest/Project.toml Fri Jan 08 12:32:09 2021 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,13 +0,0 @@ -name = "DenoiseTest" -authors = ["Tuomo Valkonen <tuomov@iki.fi>"] -version = "0.1.0" - -[deps] -AlgTools = "c46e2e78-5339-41fd-a966-983ff60ab8e7" -ColorTypes = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -ColorVectorSpace = "c3611d14-8923-5661-9e6a-0046d554d3a4" -FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -ImageIO = "82e4d734-157c-48bb-816b-45c225c6df19" -ImageTools = "b548cc0d-4ade-417e-bf62-0e39f9d2eee9" -Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" -TestImages = "5e47fb64-e119-507b-a336-dd2b206d9990"
--- a/DenoiseTest/src/DenoiseTest.jl Fri Jan 08 12:32:09 2021 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,82 +0,0 @@ -################## -# Denoise testing -################## - -module DenoiseTest - -# Our exports -export test_denoise, default_params - -# Dependencies -using Printf -using FileIO -using ColorTypes: Gray -# ColorVectorSpace is only needed to ensure that conversions -# between different ColorTypes are defined. -import ColorVectorSpace -import TestImages - -using AlgTools.Util -using AlgTools.LinkedLists -using ImageTools.Denoise -using ImageTools.Visualise - -# Parameters -const default_save_prefix="denoise_result_" - -const default_params = ( - α = 1, - # PDPS - # τ₀ = 5, - # σ₀ = 0.99/5, - # FISTA - τ₀ = 0.9, - ρ = 0, - accel = true, - noise_level = 0.5, - verbose_iter = 10, - maxiter = 1000, - save_results = false, - image_name = "lighthouse", - save_iterations = false -) - -####################### -# Main testing routine -####################### - -function test_denoise(; - visualise=true, - save_prefix=default_save_prefix, - kwargs...) - - - # Parameters for this experiment - params = default_params ⬿ kwargs - params = params ⬿ (save_prefix = save_prefix * params.image_name,) - - # Load image and add noise - b = Float64.(Gray{Float64}.(TestImages.testimage(params.image_name))) - b_noisy = b .+ params.noise_level.*randn(size(b)...) - - # Launch (background) visualiser - st, iterate = initialise_visualisation(visualise) - - # Run algorithm - x, y, st = denoise_fista(b_noisy; iterate=iterate, params=params) - - if params.save_results - perffile = params.save_prefix * ".txt" - println("Saving " * perffile) - write_log(perffile, st.log, "# params = $(params)\n") - fn = (t, ext) -> "$(params.save_prefix)_$(t).$(ext)" - save(File(format"PNG", fn("true", "png")), grayimg(b)) - save(File(format"PNG", fn("data", "png")), grayimg(b_noisy)) - save(File(format"PNG", fn("reco", "png")), grayimg(x)) - end - - # Exit background visualiser - finalise_visualisation(st) -end - -end
--- a/README.md Fri Jan 08 12:32:09 2021 -0500 +++ b/README.md Fri Jan 08 15:54:35 2021 -0500 @@ -45,8 +45,8 @@ To run a simple denoising test using FISTA, use ```console -$ julia --project=DenoiseTest -julia> using DenoiseTest +$ julia --project=Tests +julia> using Tests julia> test_denoise() ```
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Tests/Manifest.toml Fri Jan 08 15:54:35 2021 -0500 @@ -0,0 +1,789 @@ +# This file is machine-generated - editing it directly is not advised + +[[AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "8ed9de2f1b1a9b1dee48582ad477c6e67b83eb2c" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.0.0" + +[[Adapt]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "345a14764e43fe927d6f5c250fe4c8e4664e6ee8" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "2.4.0" + +[[AlgTools]] +deps = ["DelimitedFiles", "Printf"] +path = "../../AlgTools" +uuid = "c46e2e78-5339-41fd-a966-983ff60ab8e7" +version = "0.1.0" + +[[Artifacts]] +deps = ["Pkg"] +git-tree-sha1 = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744" +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.3.0" + +[[AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "f31f50712cbdf40ee8287f0443b57503e34122ef" +uuid = 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Tests/Project.toml Fri Jan 08 15:54:35 2021 -0500 @@ -0,0 +1,13 @@ +name = "Tests" +authors = ["Tuomo Valkonen <tuomov@iki.fi>"] +version = "0.1.0" + +[deps] +AlgTools = "c46e2e78-5339-41fd-a966-983ff60ab8e7" +ColorTypes = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +ColorVectorSpace = "c3611d14-8923-5661-9e6a-0046d554d3a4" +FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +ImageIO = "82e4d734-157c-48bb-816b-45c225c6df19" +ImageTools = "b548cc0d-4ade-417e-bf62-0e39f9d2eee9" +Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" +TestImages = "5e47fb64-e119-507b-a336-dd2b206d9990"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Tests/src/Tests.jl Fri Jan 08 15:54:35 2021 -0500 @@ -0,0 +1,82 @@ +################## +# Denoise testing +################## + +module Tests + +# Our exports +export test_denoise, default_params + +# Dependencies +using Printf +using FileIO +using ColorTypes: Gray +# ColorVectorSpace is only needed to ensure that conversions +# between different ColorTypes are defined. +import ColorVectorSpace +import TestImages + +using AlgTools.Util +using AlgTools.LinkedLists +using ImageTools.Denoise +using ImageTools.Visualise + +# Parameters +const default_save_prefix="denoise_result_" + +const default_params = ( + α = 1, + # PDPS + # τ₀ = 5, + # σ₀ = 0.99/5, + # FISTA + τ₀ = 0.9, + ρ = 0, + accel = true, + noise_level = 0.5, + verbose_iter = 10, + maxiter = 1000, + save_results = false, + image_name = "lighthouse", + save_iterations = false +) + +####################### +# Main testing routine +####################### + +function test_denoise(; + visualise=true, + save_prefix=default_save_prefix, + kwargs...) + + + # Parameters for this experiment + params = default_params ⬿ kwargs + params = params ⬿ (save_prefix = save_prefix * params.image_name,) + + # Load image and add noise + b = Float64.(Gray{Float64}.(TestImages.testimage(params.image_name))) + b_noisy = b .+ params.noise_level.*randn(size(b)...) + + # Launch (background) visualiser + st, iterate = initialise_visualisation(visualise) + + # Run algorithm + x, y, st = denoise_fista(b_noisy; iterate=iterate, params=params) + + if params.save_results + perffile = params.save_prefix * ".txt" + println("Saving " * perffile) + write_log(perffile, st.log, "# params = $(params)\n") + fn = (t, ext) -> "$(params.save_prefix)_$(t).$(ext)" + save(File(format"PNG", fn("true", "png")), grayimg(b)) + save(File(format"PNG", fn("data", "png")), grayimg(b_noisy)) + save(File(format"PNG", fn("reco", "png")), grayimg(x)) + end + + # Exit background visualiser + finalise_visualisation(st) +end + +end