Mercurial > repos > ImageTools / changeset
changeset
merge
Fri, 03 May 2024 13:06:24 -0500
- author
- Tuomo Valkonen <tuomov@iki.fi>
- date
- Fri, 03 May 2024 13:06:24 -0500
- changeset 62
- a6eed11d13df
- parent 61
- 06cfef2c06c5 (diff)
- parent 60
- dcfc38ade15b (current diff)
- child 63
- fdc40ffcc0d3
merge
| src/Visualise.jl | file | annotate | diff | comparison | revisions |
--- a/DenoiseTest/Manifest.toml Wed Dec 02 12:54:43 2020 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,393 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -[[AlgTools]] -deps = ["DelimitedFiles", "Printf"] -path = "../../AlgTools" -uuid = "c46e2e78-5339-41fd-a966-983ff60ab8e7" -version = "0.1.0" - -[[Artifacts]] -deps = ["Pkg"] -git-tree-sha1 = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744" -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" -version = "1.3.0" - -[[AxisArrays]] -deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "f31f50712cbdf40ee8287f0443b57503e34122ef" -uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.3" - -[[Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[CEnum]] -git-tree-sha1 = "215a9aa4a1f23fbd05b92769fdd62559488d70e9" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.1" - -[[ColorTypes]] -deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "4bffea7ed1a9f0f3d1a131bbcd4b925548d75288" -uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.10.9" - -[[ColorVectorSpace]] -deps = ["ColorTypes", "Colors", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "StatsBase"] -git-tree-sha1 = "2ae827d936fa9d8e00dd5166563499c07c5672c5" -uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.8.6" - -[[Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Reexport"] -git-tree-sha1 = "008d6bc68dea6beb6303fdc37188cb557391ebf2" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.4" - -[[Compat]] -deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] -git-tree-sha1 = "b4f242d5e9f65648d438a03d245a9fdc6e38d728" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "3.22.0" - -[[CompilerSupportLibraries_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "8e695f735fca77e9708e795eda62afdb869cbb70" -uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "0.3.4+0" - 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--- a/DenoiseTest/Project.toml Wed Dec 02 12:54:43 2020 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,13 +0,0 @@ -name = "DenoiseTest" -authors = ["Tuomo Valkonen <tuomov@iki.fi>"] -version = "0.1.0" - -[deps] -AlgTools = "c46e2e78-5339-41fd-a966-983ff60ab8e7" -ColorTypes = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -ColorVectorSpace = "c3611d14-8923-5661-9e6a-0046d554d3a4" -FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -ImageIO = "82e4d734-157c-48bb-816b-45c225c6df19" -ImageTools = "b548cc0d-4ade-417e-bf62-0e39f9d2eee9" -Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" -TestImages = "5e47fb64-e119-507b-a336-dd2b206d9990"
--- a/DenoiseTest/src/DenoiseTest.jl Wed Dec 02 12:54:43 2020 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,82 +0,0 @@ -################## -# Denoise testing -################## - -module DenoiseTest - -# Our exports -export test_denoise, default_params - -# Dependencies -using Printf -using FileIO -using ColorTypes: Gray -# ColorVectorSpace is only needed to ensure that conversions -# between different ColorTypes are defined. -import ColorVectorSpace -import TestImages - -using AlgTools.Util -using AlgTools.LinkedLists -using ImageTools.Denoise -using ImageTools.Visualise - -# Parameters -const default_save_prefix="denoise_result_" - -const default_params = ( - α = 1, - # PDPS - # τ₀ = 5, - # σ₀ = 0.99/5, - # FISTA - τ₀ = 0.9, - ρ = 0, - accel = true, - noise_level = 0.5, - verbose_iter = 10, - maxiter = 1000, - save_results = false, - image_name = "lighthouse", - save_iterations = false -) - -####################### -# Main testing routine -####################### - -function test_denoise(; - visualise=true, - save_prefix=default_save_prefix, - kwargs...) - - - # Parameters for this experiment - params = default_params ⬿ kwargs - params = params ⬿ (save_prefix = save_prefix * params.image_name,) - - # Load image and add noise - b = Float64.(Gray{Float64}.(TestImages.testimage(params.image_name))) - b_noisy = b .+ params.noise_level.*randn(size(b)...) - - # Launch (background) visualiser - st, iterate = initialise_visualisation(visualise) - - # Run algorithm - x, y, st = denoise_fista(b_noisy; iterate=iterate, params=params) - - if params.save_results - perffile = params.save_prefix * ".txt" - println("Saving " * perffile) - write_log(perffile, st.log, "# params = $(params)\n") - fn = (t, ext) -> "$(params.save_prefix)_$(t).$(ext)" - save(File(format"PNG", fn("true", "png")), grayimg(b)) - save(File(format"PNG", fn("data", "png")), grayimg(b_noisy)) - save(File(format"PNG", fn("reco", "png")), grayimg(x)) - end - - # Exit background visualiser - finalise_visualisation(st) -end - -end
--- a/LICENSE Wed Dec 02 12:54:43 2020 -0500 +++ b/LICENSE Fri May 03 13:06:24 2024 -0500 @@ -1,21 +1,43 @@ -This software is distributed under an ANTI-ABUSE LICENSE (aka. *bollocks -to copyright and distributions* license), and without any warranty whatsoever. -If you redistribute this software as part of a larger collection, distribution, -or suite of software, you must do one of the following: + +# Anti-abuse license + +## Rationale + +The purpose of this license is to give end-users and developers maximal +freedom to use this software while preventing the authors from being +abused by powerful middle-men that repackage software for convenient +installation by users. Such potentially abusive middle-men include in +particular Linux distributions and similar centralising software +distribution schemes developed for other operating systems. +The ethos of this license is *bollocks to copyright and distributions!* + +## Rules -(a) Always redistribute the **unmodified** and **latest** version provided -by the lead author. If the lead author releases a new version (on a specific -branch, such as 'stable' or 'development'), you must promptly make that new -version the default version offered to your users (on that specific branch). +This software is distributed without any warranty whatsoever. + +If you redistribute modified versions of this software to the public, +you must clearly mark them as modified. + +If you redistribute this software to the public as part of a large +collection of software with the purpose of providing end-users with +a convenient installation method, you must do one of the following: + +(a) Always redistribute the **unmodified** and **latest** version +provided by the authors. If the lead author releases a new version (on a +specific branch, such as 'stable' or 'development'), you must promptly +make that new version the default version offered to your users (on +that specific branch). (b) Rename the software, and make it obvious that your modified or obsolete -software is in no way connected to the lead author of the original software. -The users of your version should under no circumstances be under the -illusion that they can contact the lead author or any of the authors of the -original software if they have any complaints or queries. +software is in no way connected to the authors of the original software. +The users of your version should under no circumstances be under the +illusion that they can contact the lead author or any of the authors +of the original software if they have any complaints or queries. (c) Do not in any way directly expose this software to your users. Otherwise, do whatever you want with this software. In particular, you may -freely use code snippets in other projects. - +freely use the software as part of other projects, and redistribute to +the public archival copies of the software (as long as your archive cannot +be considered a “convenient installation method” that will be governed by +the rules above).
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--- a/Project.toml Wed Dec 02 12:54:43 2020 -0500 +++ b/Project.toml Fri May 03 13:06:24 2024 -0500 @@ -1,7 +1,7 @@ name = "ImageTools" uuid = "b548cc0d-4ade-417e-bf62-0e39f9d2eee9" authors = ["Tuomo Valkonen <tuomov@iki.fi>"] -version = "0.1.0" +version = "0.1.1" [deps] AlgTools = "c46e2e78-5339-41fd-a966-983ff60ab8e7"
--- a/README.md Wed Dec 02 12:54:43 2020 -0500 +++ b/README.md Fri May 03 13:06:24 2024 -0500 @@ -7,10 +7,11 @@ * Effective visualisation based directly on `GR` instead of `Plots`. A sample visualisation main loop that calls [AlgTools][]-style step routines. - * Sub-pixelresolution image translation and sub-image extraction + * Sub-pixel resolution image translation and sub-image extraction * Calculation of discrete image gradients (2D, 3D 3D vector fields) * A very simple image filtering code that seems more efficient than the `ImageFiltering` package. + * Tools to _apply_ colour maps to raw image data, that surprisingly seem to be missing from the standard libraries. The code is used, for example, by <http://dx.doi.org/10.5281/zenodo.3659180>. @@ -45,9 +46,15 @@ To run a simple denoising test using FISTA, use ```console -$ julia --project=DenoiseTest -julia> using DenoiseTest +$ julia --project=Tests +julia> using Tests julia> test_denoise() ``` +To run a deblurring test using PDPS, continue with + +```console +julia> test_deblur() +``` + [AlgTools]: https://tuomov.iki.fi/software/AlgTools/
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Tests/Manifest.toml Fri May 03 13:06:24 2024 -0500 @@ -0,0 +1,931 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.7.0" +manifest_format = "2.0" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "485ee0867925449198280d4af84bdb46a2a404d0" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.0.1" + +[[deps.Adapt]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "84918055d15b3114ede17ac6a7182f68870c16f7" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "3.3.1" + +[[deps.AlgTools]] +deps = ["DelimitedFiles", "Printf"] +path = "../../AlgTools" +uuid = "c46e2e78-5339-41fd-a966-983ff60ab8e7" +version = "0.1.1" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" + +[[deps.ArrayInterface]] +deps = ["Compat", "IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"] +git-tree-sha1 = "265b06e2b1f6a216e0e8f183d28e4d354eab3220" +uuid = 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"c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.4.0+3" + +[[deps.Zlib_jll]] +deps = ["Libdl"] +uuid = "83775a58-1f1d-513f-b197-d71354ab007a" + +[[deps.Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "cc4bf3fdde8b7e3e9fa0351bdeedba1cf3b7f6e6" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.5.0+0" + +[[deps.libass_jll]] +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" +version = "0.15.1+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" +version = "2.0.2+0" + +[[deps.libpng_jll]] +deps = 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= "3.5.0+0" + +[[deps.xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "0.9.1+5"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Tests/Project.toml Fri May 03 13:06:24 2024 -0500 @@ -0,0 +1,13 @@ +name = "Tests" +authors = ["Tuomo Valkonen <tuomov@iki.fi>"] +version = "0.1.1" + +[deps] +AlgTools = "c46e2e78-5339-41fd-a966-983ff60ab8e7" +ColorTypes = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" +ColorVectorSpace = "c3611d14-8923-5661-9e6a-0046d554d3a4" +FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +ImageIO = "82e4d734-157c-48bb-816b-45c225c6df19" +ImageTools = "b548cc0d-4ade-417e-bf62-0e39f9d2eee9" +Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" +TestImages = "5e47fb64-e119-507b-a336-dd2b206d9990"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Tests/src/Tests.jl Fri May 03 13:06:24 2024 -0500 @@ -0,0 +1,126 @@ +################## +# Denoise testing +################## + +module Tests + +# Our exports +export test_denoise, + test_deblur + +# Dependencies +using Printf +using FileIO +using ColorTypes: Gray +# ColorVectorSpace is only needed to ensure that conversions +# between different ColorTypes are defined. +import ColorVectorSpace +import TestImages + +using AlgTools.Util +using AlgTools.LinkedLists +using ImageTools.Denoise +using ImageTools.Visualise +using ImageTools.TVRecon +using ImageTools.ImFilter + +# Parameters +const default_save_prefix="result_" + +const default_params = ( + ρ = 0, + noise_level = 0.5, + verbose_iter = 10, + maxiter = 1000, + save_results = false, + image_name = "lighthouse", + save_iterations = false +) + +const denoise_params = ( + α = 2, + # FISTA + τ₀ = 0.9, + accel = true, +) + +const deblur_params = ( + α = 0.5, + # PDPS + τ₀ = 5, + σ₀ = 0.99/5, + accel = false, +) + +function save_results(params, b, b_data, x) + if params.save_results + perffile = params.save_prefix * ".txt" + println("Saving " * perffile) + write_log(perffile, st.log, "# params = $(params)\n") + fn = (t, ext) -> "$(params.save_prefix)_$(t).$(ext)" + save(File(format"PNG", fn("true", "png")), grayimg(b)) + save(File(format"PNG", fn("data", "png")), grayimg(b_data)) + save(File(format"PNG", fn("reco", "png")), grayimg(x)) + end +end + +############### +# Denoise test +############### + +function test_denoise(; + visualise=true, + save_prefix=default_save_prefix, + kwargs...) + + # Parameters for this experiment + params = default_params ⬿ denoise_params ⬿ kwargs + params = params ⬿ (save_prefix = save_prefix * "denoise_" * params.image_name,) + + # Load image and add noise + b = Float64.(Gray.(TestImages.testimage(params.image_name))) + b_noisy = b .+ params.noise_level.*randn(size(b)...) + + # Launch (background) visualiser + st, iterate = initialise_visualisation(visualise) + + # Run algorithm + x, y, st = denoise_fista(b_noisy; iterate=iterate, params=params) + + save_results(params, b, b_noisy, x) + + # Exit background visualiser + finalise_visualisation(st) +end + +############## +# Deblur test +############## + +function test_deblur(; + visualise=true, + save_prefix=default_save_prefix, + kwargs...) + + # Parameters for this experiment + params = default_params ⬿ deblur_params ⬿ kwargs + params = params ⬿ (save_prefix = save_prefix * "deblur_" * params.image_name,) + + # Load image and add noise + b = Float64.(Gray{Float64}.(TestImages.testimage(params.image_name))) + op = FilterKernel(gaussian(2, [7,7])) + b_data = op(b .+ params.noise_level.*randn(size(b)...)) + + # Launch (background) visualiser + st, iterate = initialise_visualisation(visualise) + + # Run algorithm + x, y, st = recon_pdps(b_data, op; xinit=zeros(size(b)...), iterate=iterate, params=params) + + save_results(params, b, b_data, x) + + # Exit background visualiser + finalise_visualisation(st) +end + +end
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/src/ColourTools.jl Fri May 03 13:06:24 2024 -0500 @@ -0,0 +1,30 @@ + +############################################# +# Utilities to work with colourmapped images +############################################# + +module ColourTools + +using ColorTypes: Gray + +# Our exports + +export grayimg, + mapped_img, + clip + +# Clip image values to allowed range +clip = x -> min(max(x, 0.0), 1.0) + +# Tell that raw image data is grayscale +grayimg = im -> Gray.(clip.(im)) + +# Apply a colourmap (vector of RGB objects) to raw image data +function mapped_img(im, cmap) + l = length(cmap) + apply = t -> cmap[1+round(UInt8, clip(t) * (l-1))] + return apply.(im) +end + +end +
--- a/src/Denoise.jl Wed Dec 02 12:54:43 2020 -0500 +++ b/src/Denoise.jl Fri May 03 13:06:24 2024 -0500 @@ -8,7 +8,7 @@ using AlgTools.Util import AlgTools.Iterate -using ImageTools.Gradient +using ..Gradient ############## # Our exports @@ -56,7 +56,7 @@ function denoise_pdps(b :: Image; xinit :: Union{Image,Nothing} = nothing, - iterate = AlgTools.simple_iterate, + iterate = Iterate.simple_iterate, params::NamedTuple) ################################
--- a/src/ImFilter.jl Wed Dec 02 12:54:43 2020 -0500 +++ b/src/ImFilter.jl Fri May 03 13:06:24 2024 -0500 @@ -8,27 +8,32 @@ module ImFilter using OffsetArrays -using AlgTools.Util: @threadsif +using AlgTools.Util: @threadsif, norm₁ +using AlgTools.LinOps ########## # Exports ########## export simple_imfilter, - gaussian + simple_imfilter!, + simple_imfilter_adjoint, + simple_imfilter_adjoint!, + gaussian, + FilterKernel ############## # The routine ############## +Image = Array{Float64,2} +Kernel = OffsetArray{Float64,2,Image} + @inline function inside(i, aʹ, bʹ, a, b) return (max(a, i - aʹ) - i):(min(b, i + bʹ) - i) end -function simple_imfilter(b::Array{Float64,2}, - kernel::OffsetArray{Float64,2,Array{Float64,2}}; - threads::Bool=true) - +function simple_imfilter!(res::Image, b::Image, kernel::Kernel; threads::Bool=true) n, m = size(b) k, 𝓁 = size(kernel) o₁, o₂ = kernel.offsets @@ -36,9 +41,7 @@ b₁, b₂ = -1 - o₁, -1 - o₂ kp = kernel.parent - @assert(isodd(k) && isodd(𝓁)) - - res = similar(b) + @assert(isodd(k) && isodd(𝓁) && size(res)==size(b)) @threadsif threads for i=1:n @inbounds for j=1:m @@ -57,6 +60,72 @@ return res end +function simple_imfilter(b::Image, kernel::Kernel; threads::Bool=true) + res = similar(b) + simple_imfilter!(res, b, kernel) +end + +function simple_imfilter_adjoint!(res::Image, b::Image, kernel::Kernel; threads::Bool=true) + n, m = size(b) + k, 𝓁 = size(kernel) + o₁, o₂ = kernel.offsets + a₁, a₂ = k + o₁, 𝓁 + o₂ + b₁, b₂ = -1 - o₁, -1 - o₂ + kp = kernel.parent + + @assert(isodd(k) && isodd(𝓁) && size(res)==size(b)) + + res .= 0 + + @threadsif threads for i=1:n + @inbounds for j=1:m + it₁ = inside(i, a₁, b₁, 1, n) + it₂ = inside(j, a₂, b₂, 1, m) + for p=it₁ + @simd for q=it₂ + res[i+p,j+q] += kp[p-o₁, q-o₂]*b[i, j] + end + end + end + end + + return res +end + +function simple_imfilter_adjoint(b::Image, kernel::Kernel; threads::Bool=true) + res = similar(b) + simple_imfilter_adjoint!(res, b, kernel) +end + +########################### +# Abstract linear operator +########################### + +struct FilterKernel <: AdjointableOp{Image, Image} + kernel::Kernel +end + +function (op::FilterKernel)(b::Image) + return simple_imfilter(b, op.kernel) +end + +function LinOps.inplace!(y::Image, op::FilterKernel, x::Image) + return simple_imfilter!(y, x, op.kernel) +end + +function LinOps.calc_adjoint(op::FilterKernel, y::Image) + return simple_imfilter_adjoint(y, op.kernel) +end + +function LinOps.calc_adjoint!(res::Image, op::FilterKernel, y::Image) + return simple_imfilter_adjoint!(res, y, op.kernel) +end + +function LinOps.opnorm_estimate(op::FilterKernel) + # Due to |f * g|_p ≤ |f|_p|g|_1 + return norm₁(op.kernel) +end + ###################################################### # Distributions. Just to avoid the long load times of # ImageFiltering and heavy dependencies on FFTW etc.
--- a/src/ImageTools.jl Wed Dec 02 12:54:43 2020 -0500 +++ b/src/ImageTools.jl Fri May 03 13:06:24 2024 -0500 @@ -7,8 +7,10 @@ include("Gradient.jl") include("Translate.jl") include("Denoise.jl") +include("ColourTools.jl") include("Visualise.jl") include("ImFilter.jl") +include("TVRecon.jl") end # module
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/src/TVRecon.jl Fri May 03 13:06:24 2024 -0500 @@ -0,0 +1,121 @@ +######################################################## +# TV reconstruction via primal–dual proximal splitting +######################################################## + +__precompile__() + +module TVRecon + +using AlgTools.Util +using AlgTools.LinOps +import AlgTools.Iterate +using ..Gradient + +############## +# Our exports +############## + +export recon_pdps + +############# +# Data types +############# + +ImageSize = Tuple{Integer,Integer} +Image = Array{Float64,2} +Primal = Image +Dual = Array{Float64,3} + +######################### +# Iterate initialisation +######################### + +function init_rest(x::Primal, b::Array{Float64, N}) where N + imdim=size(x) + datadim=size(b) + + y = zeros(2, imdim...) + λ = zeros(datadim...) + Δx₁ = copy(x) + Δx₂ = copy(x) + Δy = copy(y) + Δλ = copy(λ) + x̄ = copy(x) + + return x, y, λ, Δx₁, Δx₂, Δy, Δλ, x̄ +end + +function init_primal(xinit::Image) + return copy(xinit) +end + +############ +# Algorithm +############ + +function recon_pdps(b :: Data, op :: LinOp{Image, Data}; + xinit :: Union{Image, Nothing} = nothing, + iterate = Iterate.simple_iterate, + params::NamedTuple) where Data + + ################################ + # Extract and set up parameters + ################################ + + α, ρ = params.α, params.ρ + τ₀, σ₀ = params.τ₀, params.σ₀ + + R_K = √(∇₂_norm₂₂_est^2+opnorm_estimate(op)^2) + γ = 1 + + @assert(τ₀*σ₀ < 1) + σ = σ₀/R_K + τ = τ₀/R_K + + ###################### + # Initialise iterates + ###################### + + x, y, λ, Δx₁, Δx₂, Δy, Δλ, x̄ = init_rest(copy(xinit), b) + + #################### + # Run the algorithm + #################### + + v = iterate(params) do verbose :: Function + ω = params.accel ? 1/√(1+2*γ*τ) : 1 + + ∇₂ᵀ!(Δx₁, y) # primal step: x + inplace!(Δx₂, op', λ) # | + @. x̄ = x # | + @. x = x-τ*(Δx₁+Δx₂) # | + @. x̄ = (1+ω)*x - ω*x̄ # over-relax: x̄ = 2x-x_old + ∇₂!(Δy, x̄) # dual step: y, λ + inplace!(Δλ, op, x̄) # | + @. y = (y + σ*Δy)/(1 + σ*ρ/α) # | + proj_norm₂₁ball!(y, α) # | + @. λ = (λ + σ*(Δλ-b))/(1 + σ) # | + + if params.accel + τ, σ = τ*ω, σ/ω + end + + ################################ + # Give function value if needed + ################################ + v = verbose() do + ∇₂!(Δy, x) + inplace!(Δλ, op, x) + value = norm₂²(Δλ-b)/2 + params.α*γnorm₂₁(Δy, params.ρ) + value, x + end + + v + end + + return x, y, v +end + +end # Module + +
--- a/src/Visualise.jl Wed Dec 02 12:54:43 2020 -0500 +++ b/src/Visualise.jl Fri May 03 13:06:24 2024 -0500 @@ -7,7 +7,6 @@ using Printf using FileIO using Setfield -using ColorTypes: Gray #using Plots #using Measures import GR @@ -16,6 +15,7 @@ using AlgTools.StructTools using AlgTools.LinkedLists using AlgTools.Comms +using ..ColourTools ############## # Our exports @@ -24,8 +24,6 @@ export LogEntry, bg_visualise, visualise, - clip, - grayimg, secs_ns, iterate_visualise, initialise_visualisation, @@ -57,9 +55,6 @@ return convert(Float64, time_ns())*1e-9 end -clip = x -> min(max(x, 0.0), 1.0) -grayimg = im -> Gray.(clip.(im)) - ################ # Visualisation ################ @@ -160,7 +155,7 @@ function iterate_visualise(st :: State, step :: Function, - params :: NamedTuple) where DisplacementT + params :: NamedTuple) try for iter=1:params.maxiter st = step() do calc_objective
