src/Visualise.jl

Thu, 21 Nov 2019 18:44:27 -0500

author
Tuomo Valkonen <tuomov@iki.fi>
date
Thu, 21 Nov 2019 18:44:27 -0500
changeset 9
1cffd3d07fe2
child 11
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permissions
-rw-r--r--

Denoising routine for testing + visualisation tools

9
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1 ##################################################
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2 # Visualising and data-collecting iteration tools
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3 ##################################################
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4
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5 module Visualise
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6
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7 using Printf
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8 using Distributed
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9 using FileIO
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10 using Setfield
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11 using Images, Plots, Measures
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12
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13 using AlgTools.Util
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14 using AlgTools.StructTools
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15 using AlgTools.LinkedLists
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16
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17 ##############
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18 # Our exports
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19 ##############
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20
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21 export LogEntry,
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22 bg_visualise,
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23 visualise,
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24 clip,
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25 grayimg,
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26 secs_ns,
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27 iterate_visualise,
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28 initialise_visualisation,
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29 finalise_visualisation
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30
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31 ##################
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32 # Data structures
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33 ##################
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34
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35 struct LogEntry <: IterableStruct
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36 iter :: Int
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37 time :: Float64
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38 function_value :: Float64
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39 end
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40
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41 struct State
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42 vis :: Union{Distributed.RemoteChannel,Bool,Nothing}
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43 visproc :: Union{Nothing,Future}
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44 start_time :: Union{Real,Nothing}
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45 wasted_time :: Real
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46 log :: LinkedList{LogEntry}
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47 end
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48
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49 ##################
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50 # Helper routines
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51 ##################
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52
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53 @inline function secs_ns()
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54 return convert(Float64, time_ns())*1e-9
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55 end
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56
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57 clip = x -> min(max(x, 0.0), 1.0)
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58 grayimg = im -> Gray.(clip.(im))
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59
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60 ################
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61 # Visualisation
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62 ################
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63
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64 function bg_visualise(rc)
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65 while true
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66 imgs=take!(rc)
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67 # Take only the latest image to visualise
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68 while isready(rc)
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69 imgs=take!(rc)
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70 end
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71 # We're done if we were fed an empty image
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72 if isnothing(imgs)
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73 break
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74 end
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75 do_visualise(imgs)
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76 end
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77 return
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78 end
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79
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80 function do_visualise(imgs)
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81 plt = im -> plot(grayimg(im), showaxis=false, grid=false, aspect_ratio=:equal, margin=2mm)
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82 display(plot([plt(imgs[i]) for i =1:length(imgs)]..., reuse=true, margin=0mm))
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83 end
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84
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85 function visualise(rc_or_vis, imgs)
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86 if isa(rc_or_vis, RemoteChannel)
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87 rc = rc_or_vis
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88 while isready(rc)
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89 take!(rc)
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90 end
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91 put!(rc, imgs)
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92 elseif isa(rc_or_vis, Bool) && rc_or_vis
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93 do_visualise(imgs)
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94 end
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95 end
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96
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97 ######################################################
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98 # Iterator that does visualisation and log collection
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99 ######################################################
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100
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101 function iterate_visualise(st :: State,
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102 step :: Function,
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103 params :: NamedTuple) where DisplacementT
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104 try
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105 for iter=1:params.maxiter
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106 st = step() do calc_objective
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107 if isnothing(st.start_time)
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108 # The Julia precompiler is a miserable joke, apparently not crossing module
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109 # boundaries, so only start timing after the first iteration.
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110 st = @set st.start_time=secs_ns()
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111 end
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112
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113 verb = params.verbose_iter!=0 && mod(iter, params.verbose_iter) == 0
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114
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115 if verb || iter ≤ 20 || (iter ≤ 200 && mod(iter, 10) == 0)
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116 verb_start = secs_ns()
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117 tm = verb_start - st.start_time - st.wasted_time
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118 value, x = calc_objective()
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119
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120 entry = LogEntry(iter, tm, value)
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121
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122 # (**) Collect a singly-linked list of log to avoid array resizing
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123 # while iterating
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124 st = @set st.log=LinkedListEntry(entry, st.log)
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125
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126 if verb
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127 @printf("%d/%d J=%f\n", iter, params.maxiter, value)
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128 visualise(st.vis, (x,))
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129 end
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130
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131 if params.save_iterations
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132 fn = t -> "$(params.save_prefix)_$(t)_iter$(iter).png"
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133 save(File(format"PNG", fn("reco")), grayimg(x))
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134 end
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135
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136 st = @set st.wasted_time += (secs_ns() - verb_start)
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137 end
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138
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139 return st
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140 end
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141 end
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142 catch ex
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143 if isa(ex, InterruptException)
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144 # If SIGINT is received (user pressed ^C), terminate computations,
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145 # returning current status. Effectively, we do not call `step()` again,
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146 # ending the iterations, but letting the algorithm finish up.
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147 # Assuming (**) above occurs atomically, `st.log` should be valid, but
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148 # any results returned by the algorithm itself may be partial, as for
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149 # reasons of efficiency we do *not* store results of an iteration until
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150 # the next iteration is finished.
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151 printstyled("\rUser interrupt—finishing up.\n", bold=true, color=202)
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152 else
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153 throw(ex)
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154 end
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155 end
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156
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157 return st
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158 end
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159
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160 ####################
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161 # Launcher routines
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162 ####################
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163
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164 function initialise_visualisation(visualise; iterator=iterate_visualise)
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165 # Create visualisation
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166 if visualise
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167 rc = RemoteChannel()
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168 visproc = @spawn bg_visualise(rc)
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169 vis =rc
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170 #vis = true
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171
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172 sleep(0.01)
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173 else
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174 vis = false
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175 visproc = nothing
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176 end
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177
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178 st = State(vis, visproc, nothing, 0.0, nothing)
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179 iterate = curry(iterate_visualise, st)
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180
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181 return st, iterate
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182 end
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183
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184 function finalise_visualisation(st)
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185 if isa(st.rc, RemoteChannel)
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186 # Tell subprocess to finish, and wait
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187 put!(st.rc, nothing)
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188 wait(st.visproc)
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189 end
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190 end
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191
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192 end # Module

mercurial