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Initial working version for known convectivity and diffusivity
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1 | #include <array> |
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Initial working version for known convectivity and diffusivity
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2 | #include <cmath> |
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3 | #include <span> |
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Initial working version for known convectivity and diffusivity
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4 | |
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5 | #include <basix/finite-element.h> |
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6 | #include <dolfinx/fem/Function.h> |
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7 | #include <nanobind/nanobind.h> |
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8 | |
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9 | #include "dolfinx_access/function.h" |
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10 | // #include "mpi_proto.h" |
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11 | #include "dolfinx/geometry/BoundingBoxTree.h" |
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12 | #include "pointsource_pde/src/dolfinx_access.rs.h" |
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13 | #include "rust/cxx.h" |
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14 | |
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15 | using namespace dolfinx::fem; |
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16 | using namespace dolfinx::geometry; |
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17 | using namespace basix::element; |
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18 | using namespace dolfinx::graph; |
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19 | using namespace dolfinx::la; |
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20 | |
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21 | namespace dolfinx_access { |
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22 | extern void drop_Function_f64(Function_f64* f) { |
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23 | delete f; |
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24 | } |
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25 | |
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26 | FunctionInfo info_Function_f64(Function_f64 const* f) { |
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27 | auto fp = f->function_space(); |
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28 | auto el = fp->element()->basix_element(); |
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29 | return FunctionInfo{ |
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30 | .domain_dim = (uint32_t)fp->mesh()->geometry().dim(), |
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31 | .codomain_dim = (uint32_t)fp->element()->value_size(), |
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32 | .order = (uint32_t)fp->element()->basix_element().degree(), |
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33 | .triangular_mesh = el.cell_type() == basix::cell::type::triangle, |
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34 | }; |
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35 | } |
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36 | |
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37 | void check_compat_Function_f64(Function_f64 const* f, Function_f64 const* g) { |
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38 | if (f->function_space() != g->function_space()) { |
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39 | throw "Incompatible function spaces"; |
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40 | } |
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41 | } |
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42 | |
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43 | std::map<std::weak_ptr<const dolfinx::mesh::Mesh<double>>, |
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44 | std::shared_ptr<BoundingBoxTree<double>>, |
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45 | std::owner_less<std::weak_ptr<const dolfinx::mesh::Mesh<double>>>> |
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46 | bb_tree_cache; |
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47 | |
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48 | /// Returns the cell containg x |
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49 | int32_t cell_Mesh_f64(std::shared_ptr<const dolfinx::mesh::Mesh<double>> mesh, |
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50 | const std::array<double, 3>& x) { |
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51 | |
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52 | std::weak_ptr<const dolfinx::mesh::Mesh<double>> mesh_weak = mesh; |
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53 | std::shared_ptr<BoundingBoxTree<double>> bb_tree = bb_tree_cache[mesh_weak]; |
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54 | if (bb_tree == nullptr) { |
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55 | auto topo = mesh->topology(); |
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56 | // auto dim = mesh->geometry().dim(); |
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57 | auto dim = topo->dim(); |
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58 | |
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59 | // This fails as it inorrectly calls mesh.topology_mutable(), so need to |
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60 | // copy-paste the implementation below, with the appropriate fix. |
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61 | //*bb_tree = new BoundingBoxTree(*mesh, dim); |
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62 | // And this also doesn't work due to the privacy of `range`. |
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63 | //*bb_tree = new BoundingBoxTree(*mesh, dim, BoundingBoxTree::range(mesh->topology(), |
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64 | // dim |
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65 | auto index_map = topo->index_map(dim); |
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66 | int local_cells = index_map->size_local(); |
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67 | // We don't really do MPI; pointsource_algs is not designed for it. |
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68 | assert(local_cells == index_map->size_global()); |
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69 | std::vector<std::int32_t> r(local_cells); |
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70 | std::iota(r.begin(), r.end(), 0); |
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71 | bb_tree = |
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72 | std::make_shared<BoundingBoxTree<double>>(BoundingBoxTree(*mesh, dim, 0.0, r)); |
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73 | bb_tree_cache[mesh_weak] = bb_tree; |
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74 | } |
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75 | // Find colliding bounding boxes. This is an AdjancencyTree. |
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76 | // |
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77 | // C++ and Dolfinx are just vomit-inducing 🤮. We need some weird const double span here, |
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78 | // but then just standard x in compute_first_collding_cell below. |
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79 | auto colliding_bbs_adj = compute_collisions(*bb_tree.get(), std::span<const double>(x)); |
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80 | // Since we compute the collisions for just one node, the `array` of all links |
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81 | // of the adjancency list, will corresponding exactly the ccells whose bounding boxes |
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82 | // collide with the point. |
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83 | auto colliding_bbs = colliding_bbs_adj.array(); |
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84 | // Within the colliding bounding boxes, find the first cell that actually collides. |
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85 | int32_t local_cell = compute_first_colliding_cell(*mesh, colliding_bbs, x, 1e-9); |
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86 | // local_cell may be -1 if it was not found by the local process, so combine |
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87 | // results with MPI_MAX. |
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88 | int32_t global_cell = local_cell; |
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89 | MPI_Allreduce(&local_cell, &global_cell, 1, MPI_INT32_T, MPI_MAX, mesh->comm()); |
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90 | |
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91 | return global_cell; |
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92 | } |
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93 | |
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94 | int32_t cell_FunctionSpace_f64(FunctionSpace<double> const* v, |
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95 | const std::array<double, 3>& x) { |
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96 | return cell_Mesh_f64(v->mesh(), x); |
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97 | } |
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98 | |
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99 | int32_t cell_Function_f64(Function_f64 const* f, const std::array<double, 3>& x) { |
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100 | return cell_Mesh_f64(f->function_space()->mesh(), x); |
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101 | } |
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102 | |
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103 | std::array<double, 3 * 3> cell_coords_Function_f64_triangle(Function_f64 const* f, |
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104 | int32_t cell) { |
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105 | auto geom = f->function_space()->mesh()->geometry(); |
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106 | auto gx = geom.x(); |
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107 | auto geom_dofmap = geom.dofmap(); |
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108 | assert(geom_dofmap.extent(1) == 3); |
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109 | |
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110 | auto j0 = geom_dofmap(cell, 0); |
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111 | auto j1 = geom_dofmap(cell, 1); |
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112 | auto j2 = geom_dofmap(cell, 2); |
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113 | |
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114 | // Construct list of coordinates. Due to f->eval, we construct this as a single list |
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115 | // with all the Fenics weirdness of hard-coded 3D. |
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116 | return {gx[3 * j0], gx[3 * j0 + 1], 0, /* */ |
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117 | gx[3 * j1], gx[3 * j1 + 1], 0, /* */ |
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118 | gx[3 * j2], gx[3 * j2 + 1], 0}; |
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119 | } |
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120 | |
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121 | // We assume `f` to be real-valued. |
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122 | double eval_Function_f64_cell(Function_f64 const* f, const std::array<double, 3>& x, |
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123 | int32_t cell) { |
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124 | if (cell < 0) { |
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125 | return 0.0; |
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126 | } else { |
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127 | std::array<double, 1> res; |
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128 | f->eval(x, {1, 3}, {{cell}}, std::span(res), {1, 1}); |
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129 | return res[0]; |
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130 | } |
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131 | } |
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132 | |
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133 | double eval_Function_f64(Function_f64 const* f, const std::array<double, 3>& x) { |
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134 | return eval_Function_f64_cell(f, x, cell_Function_f64(f, x)); |
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135 | } |
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136 | |
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137 | std::array<double, 6> eval_Function_f64_cell_6(Function_f64 const* f, |
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138 | const std::array<double, 3 * 6>& x, |
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139 | int32_t cell) { |
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140 | std::array<double, 6> res; |
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141 | auto i = cell; |
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142 | f->eval(x, {6, 3}, {{i, i, i, i, i, i}}, std::span(res), {6, 1}); |
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143 | return res; |
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144 | } |
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145 | |
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146 | rust::Slice<const double> data_Function_f64(Function_f64 const* f) { |
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147 | const std::vector<double>& v = f->x()->array(); |
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148 | return rust::Slice<const double>(v.data(), v.size()); |
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149 | } |
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150 | |
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151 | rust::Slice<double> data_mut_Function_f64(Function_f64* f) { |
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152 | std::vector<double>& v = f->x()->array(); |
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153 | return rust::Slice<double>(v.data(), v.size()); |
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154 | } |
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155 | |
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156 | Function_f64* similar_Function_f64(Function_f64 const* f) { |
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157 | return new Function_f64(f->function_space()); |
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158 | } |
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159 | |
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160 | Function_f64* clone_Function_f64(Function_f64 const* f) { |
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161 | // return new Function_f64(f->function_space(), |
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162 | // std::make_shared<Vector<double>>(*f->x())); |
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163 | auto f_copy = new Function_f64(f->function_space()); |
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164 | auto fx = f->x(); |
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165 | auto x_new = f_copy->x(); |
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166 | const std::vector<double>& a_old = fx->array(); |
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167 | std::vector<double>& a_new = x_new->array(); |
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168 | std::copy(a_old.begin(), a_old.end(), a_new.begin()); |
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169 | x_new->scatter_fwd(); |
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170 | return f_copy; |
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171 | } |
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172 | |
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173 | void scatter_fwd_Function_f64(Function_f64* f) { |
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174 | f->x()->scatter_fwd(); |
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175 | } |
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176 | |
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177 | // PyObject* py_similar_Function_f64(Function_f64 const* f) { |
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178 | // return nanobind::cast(Function_f64(f->function_space())).release().ptr(); |
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179 | // } |
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180 | |
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181 | } // namespace dolfinx_access |