src/dolfinx_access.rs

Fri, 08 May 2026 17:28:21 -0500

author
Tuomo Valkonen <tuomov@iki.fi>
date
Fri, 08 May 2026 17:28:21 -0500
changeset 5
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parent 3
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permissions
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Change README title

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1 /*!
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2 Utility functions accessing C++ side Dolfinx.
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3 */
1
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4 use alg_tools::error::DynResult;
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5 use alg_tools::fe_model::{
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6 base::RealLocalModel,
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7 p2_local_model::{P2LocalModel, Simplex},
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8 };
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9 use alg_tools::loc::Loc;
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10 use anyhow::bail;
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11 use pyo3::ffi::PyImport_AppendInittab;
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12 use std::ffi::CString;
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13 use std::mem::MaybeUninit;
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14
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15 /// Import helper required for the linking to the sys crates to actually happen.
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16 #[allow(unused_imports)]
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17 mod dummy_import {
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18 use dolfinx_sys;
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19 use nanobind_sys;
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20 }
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21
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22 mod function;
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23 pub use function::DolfinxPyFunction_f64;
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24
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25 /// C++ side routines
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26 #[allow(dead_code)]
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27 #[cxx::bridge(namespace = "dolfinx_access")]
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28 pub mod ffi {
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29 /// Structure for coordinte-value pairs
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30 #[derive(Copy, Clone, Debug)]
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31 struct CoordValuePair {
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32 /// 2D coordinate
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33 x: [f64; 2],
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34 /// Value
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35 v: f64,
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36 }
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37
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38 /// Structure for information about a dolfinx `Function`
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39 #[derive(Copy, Clone, Debug)]
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40 struct FunctionInfo {
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41 /// Domain dimension
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42 domain_dim: u32,
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43 /// Codomain dimension
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44 codomain_dim: u32,
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45 /// Element order
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46 order: u32,
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47 /// Whether the mesh is triangular
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48 triangular_mesh: bool,
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49 }
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50
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51 unsafe extern "C++" {
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52 include!("pointsource_pde/include/dolfinx_access/nanobind_helpers.h");
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53 include!("pointsource_pde/include/dolfinx_access/function.h");
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54 include!("pointsource_pde/include/dolfinx_access/minmax_p2.h");
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55
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56 /// C++ side Dolfinx `Function<double>`
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57 type Function_f64;
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58 /// C-side python object.
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59 type PyObject;
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60
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61 /// Find the cell containing `x` (in 1D, 2D, or 3D, following Fenics weirdness
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62 /// of hard-coding vectors to 3D).
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63 pub unsafe fn cell_Function_f64(f: *const Function_f64, x: &[f64; 3]) -> i32;
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64
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65 /// Evaluate `f` at `x`.
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66 pub unsafe fn eval_Function_f64(f: *const Function_f64, x: &[f64; 3]) -> f64;
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67
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68 /// Evaluates `f` at `x` (in 1D, 2D, or 3D, following Fenics weirdness
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69 /// of hard-coding vectors to 3D), assuming `x` to belong to `cell`.
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70 pub unsafe fn eval_Function_f64_cell(
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71 f: *const Function_f64,
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72 x: &[f64; 3],
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73 cell: i32,
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74 ) -> f64;
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75
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76 /// Evaluate the function at 6 coordinates known to belong to given cell
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77 pub unsafe fn eval_Function_f64_cell_6(
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78 f: *const Function_f64,
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79 all_coords: &[f64; 18], // 6*3
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80 cell: i32,
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81 ) -> [f64; 6];
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82
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83 /// Get information about a dolfinx `Function_f64`.
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84 pub unsafe fn info_Function_f64(f: *const Function_f64) -> FunctionInfo;
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85
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86 /// Returns the minimum value of the Dolfinx `Function`,
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87 /// if supported (P2 elements on triangular mesh)
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88 pub unsafe fn min_Function_f64_p2(f: *const Function_f64) -> Result<CoordValuePair>;
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89
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90 /// Returns the maximum value of the Dolfinx `Function`,
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91 /// if supported (P2 elements on triangular mesh)
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92 pub unsafe fn max_Function_f64_p2(f: *const Function_f64) -> Result<CoordValuePair>;
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93
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94 /// Returns the minimum or maximum value of the Dolfinx `Function`,
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95 /// if supported (P2 elements on triangular mesh)
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96 pub unsafe fn minmax_Function_f64_p2(
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97 f: *const Function_f64,
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98 max: bool,
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99 ) -> Result<CoordValuePair>;
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100
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101 /// Checks if a Dolfinx `Function` is supported (P2 elements on triangular mesh)
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102 pub unsafe fn check_Function_f64(o: *const PyObject) -> bool;
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103
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104 /// Casts a Python object into a Dolfinx `Function` wrapper.
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105 pub unsafe fn cast_Function_f64(o: *const PyObject) -> Result<*const Function_f64>;
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106
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107 /// Casts a Python object into a mutable Dolfinx `Function` wrapper.
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108 pub unsafe fn cast_mut_Function_f64(o: *mut PyObject) -> Result<*mut Function_f64>;
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109
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110 /// Gets the 3D coordinates of the nodes of a triangular cell
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111 pub unsafe fn cell_coords_Function_f64_triangle(
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112 f: *const Function_f64,
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113 cell: i32,
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114 ) -> [f64; 9];
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115
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116 /// Returns the local weights
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117 pub unsafe fn data_Function_f64<'a>(f: *const Function_f64) -> &'a [f64];
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118
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119 /// Returns the local mutable weights
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120 pub unsafe fn data_mut_Function_f64<'a>(f: *mut Function_f64) -> &'a mut [f64];
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121
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122 /// Check the compatibility of function spaces of two functions.
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123 pub unsafe fn check_compat_Function_f64(
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124 f: *const Function_f64,
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125 g: *const Function_f64,
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126 ) -> Result<()>;
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127
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128 /// Create a new similar Dolfinx `Function`
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129 pub unsafe fn similar_Function_f64(f: *const Function_f64) -> *mut Function_f64;
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130
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131 /// Clone the Dolfinx `Function`
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132 pub unsafe fn clone_Function_f64(f: *const Function_f64) -> *mut Function_f64;
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133
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134 /// Wraps a Dolfinx `Function` into a Python object
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135 pub unsafe fn wrap_Function_f64(f: *mut Function_f64) -> *mut PyObject;
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136
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137 /// Drop helper
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138 pub unsafe fn drop_Function_f64(f: *mut Function_f64);
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139
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140 /// Scatter helper. Not truly supported.
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141 pub unsafe fn scatter_fwd_Function_f64(f: *mut Function_f64);
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142 }
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143
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144 extern "Rust" {
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145 /// Rust-side helper for minimising P2 elements. This bypasses poorly documented basix,
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146 /// and does things at a low level directly.
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147 /// `f` is the function, `simplex_coords` the coorindates of the triangle
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148 /// see [`cell_coords_Function_f64_triangle`], `cell` is the cell number,
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149 /// and `max` indicates whether to maximise or minimise.
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150 unsafe fn minmax_dolfinx_p2_cell(
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151 f: *const Function_f64,
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152 simplex_coords: &[f64; 9],
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153 cell: i32,
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154 max: bool,
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155 ) -> CoordValuePair;
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156 }
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157 }
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158
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159 use ffi::CoordValuePair;
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160
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161 /// Convert an array of 2D oordinates obtained from Fenics, which hard-codes weird 3D coordinates.
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162 #[inline]
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163 fn coords_from_fenics(&[x1, x2, _, y1, y2, _, z1, z2, _]: &[f64; 9]) -> [Loc<2, f64>; 3] {
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164 [Loc([x1, x2]), Loc([y1, y2]), Loc([z1, z2])]
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165 }
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166 // fn coords_from_fenics<const N: usize>(coords: &[[f64; 3]; N]) -> [Loc<F, 2>; N] {
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167 // coords.map(|[x1, x2, _]| Loc([x1, x2]))
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168 // }
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169
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170 /// Convert an array of 2D oordinates to Fenics, which hard-codes weird 3D coordinates.
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171 #[inline]
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172 fn coords_to_fenics([Loc([x1, x2]), Loc([y1, y2]), Loc([z1, z2])]: [Loc<2, f64>; 3]) -> [f64; 9] {
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173 [x1, x2, 0.0, y1, y2, 0.0, z1, z2, 0.0]
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174 }
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175 // fn coords_to_fenics<const N: usize>(coords: [Loc<F, 2>; N]) -> [[f64; 3]; N] {
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176 // coords.map(|Loc([x1, x2])| [x1, x2, 0.0])
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177 // }
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178
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179 /// Given a dolphinx `Function` `f`, as well as 6 coordinates on a simplex in its mesh
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180 /// (the corners and midpoints), construct a new internal P2 model on `cell`.
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181 /// If `max` is true, the model is negated compared to `f`.
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182 unsafe fn model_dolfinx_p2_cell(
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183 f: *const ffi::Function_f64,
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184 simplex_coords: &[f64; 9],
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185 cell: i32,
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186 max: bool,
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187 ) -> (P2LocalModel<f64, 2, 3>, Simplex<f64, 2, 3>) {
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188 // Form simplex
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189 let simplex = Simplex(coords_from_fenics(simplex_coords));
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190 // Form an array of all coordinates
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191 let midpoints = simplex.midpoints();
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192 let mut all_coords_uninit: [MaybeUninit<f64>; 6 * 3] = [const { MaybeUninit::uninit() }; 6 * 3];
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193 all_coords_uninit
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194 .iter_mut()
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195 .zip(
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196 simplex_coords
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197 .iter()
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198 .copied()
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199 .chain(coords_to_fenics(midpoints).into_iter()),
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200 )
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201 .for_each(|(a, b)| {
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202 a.write(b);
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203 });
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204 let all_coords = MaybeUninit::array_assume_init(all_coords_uninit);
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205 // Evaluate the function, and invert the signs of maximising
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206 let mut values = ffi::eval_Function_f64_cell_6(f, &all_coords, cell);
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207 if max {
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208 values.iter_mut().for_each(|v| *v = -*v);
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209 }
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210 // Form local model
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211 let [ref n0, ref n1, ref n2] = simplex.0;
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212 let [ref n01, ref n12, ref n20] = midpoints;
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213 let nodes = [*n0, *n1, *n2, *n01, *n12, *n20];
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214 let model = P2LocalModel::<f64, 2, 3>::new(&nodes, &values);
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215
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216 return (model, simplex);
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217 }
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218
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219 /// This is a helper routine for `minmax_dolfinx_p2`. It reconstructs a P2
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220 /// model on the cell by evaluating f at 6 points (the simplex corners given
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221 /// in `simplex_doords`, as well as edge midpoints). Then it minimises this
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222 /// model. The result should be accurate, given that `f` is assumed to have a
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223 /// P2 model on the simplex.
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224 pub unsafe fn minmax_dolfinx_p2_cell(
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225 f: *const ffi::Function_f64,
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226 simplex_coords: &[f64; 9],
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227 cell: i32,
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228 max: bool,
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229 ) -> ffi::CoordValuePair {
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230 let (model, simplex) = model_dolfinx_p2_cell(f, simplex_coords, cell, max);
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231 let (x, v) = model.minimise(&simplex);
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232 CoordValuePair { x: x.into(), v }
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233 }
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234
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235 pub const NAME: &str = "dolfinx_access";
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236
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237 unsafe extern "C" {
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238 pub fn PyInit__dolfinx_access() -> *mut pyo3::ffi::PyObject;
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239 }
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240
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241 /// Register the module in Python
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242 pub fn register_python_ffi() -> DynResult<()> {
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243 let cname = CString::new(NAME).unwrap();
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244 // We need to use into_raw() to transfer ownership; otherwise this stops working.
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245 if unsafe { PyImport_AppendInittab(cname.into_raw(), Some(PyInit__dolfinx_access)) } != 0 {
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246 bail!("Failed to add embedded nanobind dolfinx_access module");
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247 }
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248 Ok(())
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249 }

mercurial