src/plot.rs

Tue, 06 Dec 2022 14:12:20 +0200

author
Tuomo Valkonen <tuomov@iki.fi>
date
Tue, 06 Dec 2022 14:12:20 +0200
changeset 10
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parent 0
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child 21
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permissions
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v1.0.0-pre-arxiv (missing arXiv links)

0
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1 //! Plotting helper utilities
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2
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3 use numeric_literals::replace_float_literals;
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4 use std::io::Write;
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5 use image::{
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6 ImageFormat,
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7 ImageBuffer,
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8 Rgb
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9 };
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10 use itertools::izip;
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11 use colorbrewer::Palette as CbPalette;
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12
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13 use alg_tools::types::*;
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14 use alg_tools::lingrid::LinGrid;
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15 use alg_tools::mapping::RealMapping;
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16 use alg_tools::loc::Loc;
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17 use alg_tools::bisection_tree::Bounds;
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18 use alg_tools::maputil::map4;
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19 use alg_tools::tabledump::write_csv;
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20 use crate::measures::*;
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21
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22 /// Default RGB ramp from [`colorbrewer`].
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23 ///
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24 /// This is a tuple of parameters to [`colorbrewer::get_color_ramp`].
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25 const RAMP : (CbPalette, u32) = (CbPalette::RdBu, 11);
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26
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27 /// Helper trait for implementing dimension-dependent plotting routines.
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28 pub trait Plotting<const N : usize> {
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29 /// Plot several mappings and a discrete measure into a file.
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30 fn plot_into_file_spikes<
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31 F : Float,
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32 T1 : RealMapping<F, N>,
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33 T2 : RealMapping<F, N>
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34 > (
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35 g_explanation : String,
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36 g : &T1,
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37 ω_explanation : String,
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38 ω : Option<&T2>,
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39 grid : LinGrid<F, N>,
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40 bnd : Option<Bounds<F>>,
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41 μ : &DiscreteMeasure<Loc<F, N>, F>,
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42 filename : String,
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43 );
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44
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45 /// Plot a mapping into a file, sampling values on a given grid.
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46 fn plot_into_file<
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47 F : Float,
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48 T1 : RealMapping<F, N>,
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49 > (
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50 g : &T1,
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51 grid : LinGrid<F, N>,
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52 filename : String,
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53 explanation : String
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54 );
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55 }
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56
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57 /// Helper type for looking up a [`Plotting`] based on dimension.
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58 pub struct PlotLookup;
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59
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60 impl Plotting<1> for PlotLookup {
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61 fn plot_into_file_spikes<
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62 F : Float,
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63 T1 : RealMapping<F, 1>,
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64 T2 : RealMapping<F, 1>
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65 > (
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66 g_explanation : String,
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67 g : &T1,
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68 ω_explanation : String,
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69 ω0 : Option<&T2>,
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70 grid : LinGrid<F, 1>,
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71 bnd0 : Option<Bounds<F>>,
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72 μ : &DiscreteMeasure<Loc<F, 1>, F>,
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73 filename : String,
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74 ) {
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75 let start = grid.start[0].as_();
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76 let end = grid.end[0].as_();
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77 let m = μ.iter_masses().fold(F::ZERO, |m, α| m.max(α));
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78 let s = μ.iter_masses().fold(F::ZERO, |m, α| m.add(α));
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79 let mut spike_scale = F::ONE;
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80
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81 let mut plotter = poloto::plot(
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82 "f", "x",
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83 format!("f(x); spike max={:.4}, n={}, ∑={:.4}", m, μ.len(), s)
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84 ).move_into();
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85
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86 if let Some(ω) = ω0 {
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87 let graph_ω = grid.into_iter().map(|x@Loc([x0]) : Loc<F, 1>| {
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88 [x0.as_(), ω.apply(&x).as_()]
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89 });
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90 plotter.line(ω_explanation.as_str(), graph_ω.clone());
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91 // let csv_f = format!("{}.txt", filename);
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92 // write_csv(graph_ω, csv_f).expect("CSV save error");
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93 }
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94
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95 let graph_g = grid.into_iter().map(|x@Loc([x0]) : Loc<F, 1>| {
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96 [x0.as_(), g.apply(&x).as_()]
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97 });
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98 plotter.line(g_explanation.as_str(), graph_g.clone());
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99 // let csv_f = format!("{}.txt", filename);
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100 // write_csv(graph_g, csv_f).expect("CSV save error");
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101
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102 bnd0.map(|bnd| {
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103 let upperb = bnd.upper().as_();
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104 let lowerb = bnd.lower().as_();
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105 let upper : [[f64; 2]; 2] = [[start, upperb], [end, upperb]];
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106 let lower = [[start, lowerb], [end, lowerb]];
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107 spike_scale *= bnd.upper();
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108
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109 plotter.line("upper bound", upper)
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110 .line("lower bound", lower)
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111 .ymarker(lowerb)
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112 .ymarker(upperb);
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113 });
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114
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115 for &DeltaMeasure{ α, x : Loc([x]) } in μ.iter_spikes() {
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116 let spike = [[x.as_(), 0.0], [x.as_(), (α/m * spike_scale).as_()]];
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117 plotter.line("", spike);
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118 }
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119
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120 let svg = format!("{}", poloto::disp(|a| poloto::simple_theme(a, plotter)));
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121
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122 std::fs::File::create(filename + ".svg").and_then(|mut file|
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123 file.write_all(svg.as_bytes())
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124 ).expect("SVG save error");
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125 }
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126
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127 fn plot_into_file<
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128 F : Float,
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129 T1 : RealMapping<F, 1>,
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130 > (
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131 g : &T1,
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132 grid : LinGrid<F, 1>,
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133 filename : String,
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134 explanation : String
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135 ) {
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136 let graph_g = grid.into_iter().map(|x@Loc([x0]) : Loc<F, 1>| {
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137 [x0.as_(), g.apply(&x).as_()]
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138 });
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139
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140 let plotter: poloto::Plotter<'_, float, float> = poloto::plot("f", "x", "f(x)")
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141 .line(explanation.as_str(), graph_g.clone())
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142 .move_into();
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143
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144 let svg = format!("{}", poloto::disp(|a| poloto::simple_theme(a, plotter)));
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145
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146 let svg_f = format!("{}.svg", filename);
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147 std::fs::File::create(svg_f).and_then(|mut file|
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148 file.write_all(svg.as_bytes())
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149 ).expect("SVG save error");
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150
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151 let csv_f = format!("{}.txt", filename);
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152 write_csv(graph_g, csv_f).expect("CSV save error");
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153 }
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154
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155 }
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156
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157 /// Convert $[0, 1] ∈ F$ to $\\\{0, …, M\\\} ∈ F$ where $M=$`F::RANGE_MAX`.
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158 #[inline]
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159 fn scale_uint<F, U>(v : F) -> U
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160 where F : Float + CastFrom<U> + num_traits::cast::AsPrimitive<U>,
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161 U : Unsigned {
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162 (v*F::cast_from(U::RANGE_MAX)).as_()
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163 }
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164
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165 /// Convert $[a, b] ∈ F$ to $\\\{0, …, M\\\} ∈ F$ where $M=$`F::RANGE_MAX`.
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166 #[replace_float_literals(F::cast_from(literal))]
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167 #[inline]
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168 fn scale_range_uint<F, U>(v : F, &Bounds(a, b) : &Bounds<F>) -> U
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169 where F : Float + CastFrom<U> + num_traits::cast::AsPrimitive<U>,
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170 U : Unsigned {
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171 debug_assert!(a < b);
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172 scale_uint(((v - a)/(b - a)).max(0.0).min(1.0))
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173 }
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174
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175
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176 /// Sample a mapping on a grid.
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177 ///
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178 /// Returns a vector of values as well as upper and lower bounds of the values.
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179 fn rawdata_and_range<F, T>(grid : &LinGrid<F, 2>, g :&T) -> (Vec<F>, Bounds<F>)
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180 where F : Float,
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181 T : RealMapping<F, 2> {
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182 let rawdata : Vec<F> = grid.into_iter().map(|x| g.apply(&x)).collect();
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183 let range = rawdata.iter()
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184 .map(|&v| Bounds(v, v))
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185 .reduce(|b1, b2| b1.common(&b2))
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186 .unwrap();
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187 (rawdata, range)
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188 }
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189
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190 /*fn to_range<'a, F, U>(rawdata : &'a Vec<F>, range : &'a Bounds<F>)
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191 -> std::iter::Map<std::slice::Iter<'a, F>, impl FnMut(&'a F) -> U>
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192 where F : Float + CastFrom<U> + num_traits::cast::AsPrimitive<U>,
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193 U : Unsigned {
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194 rawdata.iter().map(move |&v| scale_range_uint(v, range))
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195 }*/
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196
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197 /// Convert a scalar value to an RGB triplet.
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198 ///
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199 /// Converts the value `v` supposed to be within the range `[a, b]` to an rgb value according
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200 /// to the given `ramp` of equally-spaced rgb interpolation points.
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201 #[replace_float_literals(F::cast_from(literal))]
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202 fn one_to_ramp<F, U>(
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203 &Bounds(a, b) : &Bounds<F>,
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204 ramp : &Vec<Loc<F, 3>>,
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205 v : F,
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206 ) -> Rgb<U>
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207 where F : Float + CastFrom<U> + num_traits::cast::AsPrimitive<U>,
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208 U : Unsigned {
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209
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210 let n = ramp.len() - 1;
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211 let m = F::cast_from(U::RANGE_MAX);
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212 let ramprange = move |v : F| {let m : usize = v.as_(); m.min(n).max(0) };
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213
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214 let w = F::cast_from(n) * (v - a) / (b - a); // convert [0, 1] to [0, n]
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215 let (l, u) = (w.floor(), w.ceil()); // Find closest integers
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216 let (rl, ru) = (ramprange(l), ramprange(u));
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217 let (cl, cu) = (ramp[rl], ramp[ru]); // Get corresponding colours
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218 let λ = match rl==ru { // Interpolation factor
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219 true => 0.0,
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220 false => (u - w) / (u - l),
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221 };
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222 let Loc(rgb) = cl * λ + cu * (1.0 - λ); // Interpolate
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223
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224 Rgb(rgb.map(|v| (v * m).round().min(m).max(0.0).as_()))
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225 }
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226
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227 /// Convert a an iterator over scalar values to an iterator over RGB triplets.
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228 ///
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229 /// The conversion is that performed by [`one_to_ramp`].
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230 #[replace_float_literals(F::cast_from(literal))]
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231 fn to_ramp<'a, F, U, I>(
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232 bounds : &'a Bounds<F>,
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233 ramp : &'a Vec<Loc<F, 3>>,
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234 iter : I,
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Tuomo Valkonen <tuomov@iki.fi>
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235 ) -> std::iter::Map<I, impl FnMut(F) -> Rgb<U> + 'a>
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Tuomo Valkonen <tuomov@iki.fi>
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236 where F : Float + CastFrom<U> + num_traits::cast::AsPrimitive<U>,
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237 U : Unsigned,
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Tuomo Valkonen <tuomov@iki.fi>
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238 I : Iterator<Item = F> + 'a {
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239 iter.map(move |v| one_to_ramp(bounds, ramp, v))
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240 }
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241
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242 /// Convert a [`colorbrewer`] sepcification to a ramp of rgb triplets.
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Tuomo Valkonen <tuomov@iki.fi>
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243 fn get_ramp<F : Float>((palette, nb) : (CbPalette, u32)) -> Vec<Loc<F, 3>> {
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244 let m = F::cast_from(u8::MAX);
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245 colorbrewer::get_color_ramp(palette, nb)
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246 .expect("Invalid colorbrewer ramp")
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247 .into_iter()
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248 .map(|rgb::RGB{r, g, b}| {
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249 [r, g, b].map(|c| F::cast_from(c) / m).into()
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250 }).collect()
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251 }
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252
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253 /// Perform hue shifting of an RGB value.
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Tuomo Valkonen <tuomov@iki.fi>
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254 ///
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Tuomo Valkonen <tuomov@iki.fi>
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255 // The hue `ω` is in radians.
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Tuomo Valkonen <tuomov@iki.fi>
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256 #[replace_float_literals(F::cast_from(literal))]
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Tuomo Valkonen <tuomov@iki.fi>
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257 fn hueshift<F, U>(ω : F, Rgb([r_in, g_in, b_in]) : Rgb<U>) -> Rgb<U>
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258 where F : Float + CastFrom<U>,
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diff changeset
259 U : Unsigned {
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
260 let m = F::cast_from(U::RANGE_MAX);
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Tuomo Valkonen <tuomov@iki.fi>
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261 let r = F::cast_from(r_in) / m;
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262 let g = F::cast_from(g_in) / m;
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Tuomo Valkonen <tuomov@iki.fi>
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263 let b = F::cast_from(b_in) / m;
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Tuomo Valkonen <tuomov@iki.fi>
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264 let u = ω.cos();
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
265 let w = ω.sin();
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Tuomo Valkonen <tuomov@iki.fi>
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266
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Tuomo Valkonen <tuomov@iki.fi>
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267 let nr = (0.299 + 0.701*u + 0.168*w) * r
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Tuomo Valkonen <tuomov@iki.fi>
parents:
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268 + (0.587 - 0.587*u + 0.330*w) * g
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Tuomo Valkonen <tuomov@iki.fi>
parents:
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269 + (0.114 - 0.114*u - 0.497*w) * b;
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Tuomo Valkonen <tuomov@iki.fi>
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270 let ng = (0.299 - 0.299*u - 0.328*w) * r
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Tuomo Valkonen <tuomov@iki.fi>
parents:
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271 + (0.587 + 0.413*u + 0.035*w) * g
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Tuomo Valkonen <tuomov@iki.fi>
parents:
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272 + (0.114 - 0.114*u + 0.292*w) *b;
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Tuomo Valkonen <tuomov@iki.fi>
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273 let nb = (0.299 - 0.3*u + 1.25*w) * r
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parents:
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274 + (0.587 - 0.588*u - 1.05*w) * g
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Tuomo Valkonen <tuomov@iki.fi>
parents:
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275 + (0.114 + 0.886*u - 0.203*w) * b;
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276
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Tuomo Valkonen <tuomov@iki.fi>
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277 Rgb([nr, ng, nb].map(scale_uint))
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Tuomo Valkonen <tuomov@iki.fi>
parents:
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278 }
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Tuomo Valkonen <tuomov@iki.fi>
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279
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280
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Tuomo Valkonen <tuomov@iki.fi>
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281 impl Plotting<2> for PlotLookup {
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
282 #[replace_float_literals(F::cast_from(literal))]
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
283 fn plot_into_file_spikes<
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
284 F : Float,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
285 T1 : RealMapping<F, 2>,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
286 T2 : RealMapping<F, 2>
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
287 > (
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
288 _g_explanation : String,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
289 g : &T1,
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
290 _ω_explanation : String,
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
291 ω0 : Option<&T2>,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
292 grid : LinGrid<F, 2>,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
293 _bnd0 : Option<Bounds<F>>,
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
294 μ : &DiscreteMeasure<Loc<F, 2>, F>,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
295 filename : String,
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
296 ) {
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Tuomo Valkonen <tuomov@iki.fi>
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297 let [w, h] = grid.count;
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Tuomo Valkonen <tuomov@iki.fi>
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298 let (rawdata_g, range_g) = rawdata_and_range(&grid, g);
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
299 let (rawdata_ω, range) = match ω0 {
eb3c7813b67a Initial version
Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
300 Some(ω) => {
eb3c7813b67a Initial version
Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
301 let (rawdata_ω, range_ω) = rawdata_and_range(&grid, ω);
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
302 (rawdata_ω, range_g.common(&range_ω))
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
303 },
eb3c7813b67a Initial version
Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
304 None => {
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
305 let mut zeros = Vec::new();
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
306 zeros.resize(rawdata_g.len(), 0.0);
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
307 (zeros, range_g)
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
308 }
eb3c7813b67a Initial version
Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
309 };
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
310 let ramp = get_ramp(RAMP);
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
311 let base_im_iter = to_ramp::<F, u16, _>(&range_g, &ramp, rawdata_g.iter().cloned());
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Tuomo Valkonen <tuomov@iki.fi>
parents:
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312 let im_iter = izip!(base_im_iter, rawdata_g.iter(), rawdata_ω.iter())
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
313 .map(|(rgb, &v, &w)| {
eb3c7813b67a Initial version
Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
314 hueshift(2.0 * F::PI * (v - w).abs() / range.upper(), rgb)
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
315 });
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
316 let mut img = ImageBuffer::new(w as u32, h as u32);
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
317 img.pixels_mut()
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
318 .zip(im_iter)
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Tuomo Valkonen <tuomov@iki.fi>
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319 .for_each(|(p, v)| *p = v);
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320
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321 // Add spikes
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322 let m = μ.iter_masses().fold(F::ZERO, |m, α| m.max(α));
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323 let μ_range = Bounds(F::ZERO, m);
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324 for &DeltaMeasure{ ref x, α } in μ.iter_spikes() {
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325 let [a, b] = map4(x, &grid.start, &grid.end, &grid.count, |&ξ, &a, &b, &n| {
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326 ((ξ-a)/(b-a)*F::cast_from(n)).as_()
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327 });
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328 if a < w.as_() && b < h.as_() {
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329 let sc : u16 = scale_range_uint(α, &μ_range);
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330 // TODO: use max of points that map to this pixel.
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331 img[(a, b)] = Rgb([u16::MAX, u16::MAX, sc/2]);
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332 }
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333 }
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334
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335 img.save_with_format(filename + ".png", ImageFormat::Png)
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336 .expect("Image save error");
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337 }
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338
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339 fn plot_into_file<
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340 F : Float,
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341 T1 : RealMapping<F, 2>,
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342 > (
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343 g : &T1,
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344 grid : LinGrid<F, 2>,
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345 filename : String,
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346 _explanation : String
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347 ) {
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348 let [w, h] = grid.count;
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349 let (rawdata, range) = rawdata_and_range(&grid, g);
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350 let ramp = get_ramp(RAMP);
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351 let im_iter = to_ramp::<F, u16, _>(&range, &ramp, rawdata.iter().cloned());
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352 let mut img = ImageBuffer::new(w as u32, h as u32);
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353 img.pixels_mut()
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354 .zip(im_iter)
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355 .for_each(|(p, v)| *p = v);
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356 img.save_with_format(filename.clone() + ".png", ImageFormat::Png)
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357 .expect("Image save error");
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358
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359 let csv_iter = grid.into_iter().zip(rawdata.iter()).map(|(Loc(x), &v)| (x, v));
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360 let csv_f = filename + ".txt";
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361 write_csv(csv_iter, csv_f).expect("CSV save error");
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362 }
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363
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364 }
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365
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366 /// A helper structure for plotting a sequence of images.
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367 #[derive(Clone,Debug)]
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368 pub struct SeqPlotter<F : Float, const N : usize> {
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369 /// File name prefix
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370 prefix : String,
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371 /// Maximum number of plots to perform
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372 max_plots : usize,
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373 /// Sampling grid
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374 grid : LinGrid<F, N>,
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375 /// Current plot count
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376 plot_count : usize,
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377 }
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378
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379 impl<F : Float, const N : usize> SeqPlotter<F, N>
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380 where PlotLookup : Plotting<N> {
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381 /// Creates a new sequence plotter instance
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382 pub fn new(prefix : String, max_plots : usize, grid : LinGrid<F, N>) -> Self {
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383 SeqPlotter { prefix, max_plots, grid, plot_count : 0 }
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384 }
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385
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386 /// This calls [`PlotLookup::plot_into_file_spikes`] with a sequentially numbered file name.
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387 pub fn plot_spikes<T1, T2>(
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388 &mut self,
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389 g_explanation : String,
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390 g : &T1,
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391 ω_explanation : String,
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392 ω : Option<&T2>,
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393 tol : Option<Bounds<F>>,
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394 μ : &DiscreteMeasure<Loc<F, N>, F>,
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395 ) where T1 : RealMapping<F, N>,
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396 T2 : RealMapping<F, N>
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397 {
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398 if self.plot_count == 0 && self.max_plots > 0 {
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399 std::fs::create_dir_all(&self.prefix).expect("Unable to create plot directory");
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400 }
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diff changeset
401 if self.plot_count < self.max_plots {
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diff changeset
402 PlotLookup::plot_into_file_spikes(
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diff changeset
403 g_explanation, g,
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diff changeset
404 ω_explanation, ω,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
405 self.grid,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
406 tol,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
407 μ,
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
408 format!("{}out{:03}", self.prefix, self.plot_count)
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
409 );
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Tuomo Valkonen <tuomov@iki.fi>
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diff changeset
410 self.plot_count += 1;
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Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
411 }
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parents:
diff changeset
412 }
eb3c7813b67a Initial version
Tuomo Valkonen <tuomov@iki.fi>
parents:
diff changeset
413 }

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