src/PET/phantom_slice.md

Fri, 03 May 2024 21:55:23 +0300

author
Neil Dizon <neil.dizon@helsinki.fi>
date
Fri, 03 May 2024 21:55:23 +0300
changeset 60
33d5956e7e7f
parent 49
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permissions
-rw-r--r--

README demo options added

# About the phantom slice

The file `phantom_slice.mat` is generated from the file `phantom_atlas_density_cls.mat` of

* Belzunce, M. A. (2018). High-Resolution Heterogeneous Digital PET [18F]FDG Brain Phantom based on the BigBrain Atlas (1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.1190598

The following Matlab code does the extraction:

```matlab
load('phantom_atlas_density_cls.mat')
fdgPhantom = phantom_atlas_density_cls.phantom;
slice = 280;
data = fdgPhantom(:,:,slice);
imwrite(data, 'phantom_slice.png');
save 'phantom_slice.mat' data;
```

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