src/OpticalFlow.jl.orig

Sun, 21 Apr 2024 13:41:35 +0300

author
Neil Dizon <neil.dizon@helsinki.fi>
date
Sun, 21 Apr 2024 13:41:35 +0300
changeset 15
befb8d5125cd
parent 0
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permissions
-rw-r--r--

added stable interval for PET

0
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1 ################################
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2 # Code relevant to optical flow
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3 ################################
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4
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5 __precompile__()
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6
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7 module OpticalFlow
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8
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9 using AlgTools.Util
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10 using ImageTools.Gradient
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11 import ImageTools.Translate
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12 using ImageTools.ImFilter
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13
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14 ##########
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15 # Exports
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16 ##########
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17
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18 export flow!,
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19 pdflow!,
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20 flow_grad!,
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21 flow_interp!,
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22 estimate_Λ²,
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23 estimate_linear_Λ²,
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24 pointwise_gradiprod_2d!,
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25 pointwise_gradiprod_2dᵀ!,
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26 horn_schunck_reg_prox!,
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27 horn_schunck_reg_prox_op!,
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28 mldivide_step_plus_sym2x2!,
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29 linearised_optical_flow_error,
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30 Image, AbstractImage, ImageSize,
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31 Gradient, Displacement,
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32 DisplacementFull, DisplacementConstant,
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33 HornSchunckData,
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34 filter_hs
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35
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36 ###############################################
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37 # Types (several imported from ImageTools.Translate)
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38 ###############################################
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39
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40 Image = Translate.Image
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41 AbstractImage = AbstractArray{Float64,2}
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42 Displacement = Translate.Displacement
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43 DisplacementFull = Translate.DisplacementFull
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44 DisplacementConstant = Translate.DisplacementConstant
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45 Gradient = Array{Float64,3}
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46 ImageSize = Tuple{Int64,Int64}
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47
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48 #################################
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49 # Displacement field based flow
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50 #################################
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51
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52 function flow_interp!(x::AbstractImage, u::Displacement, tmp::AbstractImage;
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53 threads = false)
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54 tmp .= x
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55 Translate.translate_image!(x, tmp, u; threads=threads)
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56 end
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57
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58 function flow_interp!(x::AbstractImage, u::Displacement;
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59 threads = false)
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60 tmp = copy(x)
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61 Translate.translate_image!(x, tmp, u; threads=threads)
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62 end
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63
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64 flow! = flow_interp!
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65
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66 function pdflow!(x, Δx, y, Δy, u, dual_flow; threads=:none)
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67 if dual_flow
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68 #flow!((x, @view(y[1, :, :]), @view(y[2, :, :])), diffu,
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69 # (Δx, @view(Δy[1, :, :]), @view(Δy[2, :, :])))
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70 @backgroundif (threads==:outer) begin
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71 flow!(x, u, Δx; threads=(threads==:inner))
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72 end begin
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73 flow!(@view(y[1, :, :]), u, @view(Δy[1, :, :]); threads=(threads==:inner))
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74 flow!(@view(y[2, :, :]), u, @view(Δy[2, :, :]); threads=(threads==:inner))
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75 end
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76 else
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77 flow!(x, u, Δx)
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78 end
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79 end
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80
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81 function pdflow!(x, Δx, y, Δy, z, Δz, u, dual_flow; threads=:none)
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82 if dual_flow
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83 @backgroundif (threads==:outer) begin
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84 flow!(x, u, Δx; threads=(threads==:inner))
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85 flow!(z, u, Δz; threads=(threads==:inner))
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86 end begin
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87 flow!(@view(y[1, :, :]), u, @view(Δy[1, :, :]); threads=(threads==:inner))
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88 flow!(@view(y[2, :, :]), u, @view(Δy[2, :, :]); threads=(threads==:inner))
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89 end
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90 else
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91 flow!(x, u, Δx; threads=(threads==:inner))
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92 flow!(z, u, Δz; threads=(threads==:inner))
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93 end
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94 end
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95
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96 ##########################
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97 # Linearised optical flow
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98 ##########################
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99
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100 # ⟨⟨u, ∇b⟩⟩
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101 function pointwise_gradiprod_2d!(y::Image, vtmp::Gradient,
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102 u::DisplacementFull, b::Image;
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103 add = false)
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104 ∇₂c!(vtmp, b)
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105
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106 u′=reshape(u, (size(u, 1), prod(size(u)[2:end])))
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107 vtmp′=reshape(vtmp, (size(vtmp, 1), prod(size(vtmp)[2:end])))
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108 y′=reshape(y, prod(size(y)))
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109
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110 if add
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111 @simd for i = 1:length(y′)
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112 @inbounds y′[i] += dot(@view(u′[:, i]), @view(vtmp′[:, i]))
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113 end
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114 else
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115 @simd for i = 1:length(y′)
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116 @inbounds y′[i] = dot(@view(u′[:, i]), @view(vtmp′[:, i]))
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117 end
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118 end
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119 end
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120
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121 function pointwise_gradiprod_2d!(y::Image, vtmp::Gradient,
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122 u::DisplacementConstant, b::Image;
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123 add = false)
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124 ∇₂c!(vtmp, b)
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125
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126 vtmp′=reshape(vtmp, (size(vtmp, 1), prod(size(vtmp)[2:end])))
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127 y′=reshape(y, prod(size(y)))
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128
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129 if add
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130 @simd for i = 1:length(y′)
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131 @inbounds y′[i] += dot(u, @view(vtmp′[:, i]))
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132 end
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133 else
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134 @simd for i = 1:length(y′)
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135 @inbounds y′[i] = dot(u, @view(vtmp′[:, i]))
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136 end
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137 end
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138 end
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139
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140 # ∇b ⋅ y
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141 function pointwise_gradiprod_2dᵀ!(u::DisplacementFull, y::Image, b::Image)
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142 ∇₂c!(u, b)
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143
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144 u′=reshape(u, (size(u, 1), prod(size(u)[2:end])))
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145 y′=reshape(y, prod(size(y)))
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146
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147 @simd for i=1:length(y′)
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148 @inbounds @. u′[:, i] *= y′[i]
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149 end
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150 end
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151
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152 function pointwise_gradiprod_2dᵀ!(u::DisplacementConstant, y::Image, b::Image)
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153 @assert(size(y)==size(b) && size(u)==(2,))
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154 u .= 0
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155 ∇₂cfold!(b, nothing) do g, st, (i, j)
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156 @inbounds u .+= g.*y[i, j]
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157 return st
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158 end
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159 # Reweight to be with respect to 𝟙^*𝟙 inner product.
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160 u ./= prod(size(b))
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161 end
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162
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163 mutable struct ConstantDisplacementHornSchunckData
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164 M₀::Array{Float64,2}
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165 z::Array{Float64,1}
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166 Mv::Array{Float64,2}
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167 av::Array{Float64,1}
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168 cv::Float64
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169
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170 function ConstantDisplacementHornSchunckData()
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171 return new(zeros(2, 2), zeros(2), zeros(2,2), zeros(2), 0)
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172 end
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173 end
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174
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175 # For DisplacementConstant, for the simple prox step
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176 #
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177 # (1) argmin_u 1/(2τ)|u-ũ|^2 + (θ/2)|b⁺-b+<<u-ŭ,∇b>>|^2 + (λ/2)|u-ŭ|^2,
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178 #
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179 # construct matrix M₀ and vector z such that we can solve u from
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180 #
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181 # (2) (I/τ+M₀)u = M₀ŭ + ũ/τ - z
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182 #
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183 # Note that the problem
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184 #
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185 # argmin_u 1/(2τ)|u-ũ|^2 + (θ/2)|b⁺-b+<<u-ŭ,∇b>>|^2 + (λ/2)|u-ŭ|^2
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186 # + (θ/2)|b⁺⁺-b⁺+<<uʹ-u,∇b⁺>>|^2 + (λ/2)|u-uʹ|^2
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187 #
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188 # has with respect to u the system
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189 #
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190 # (I/τ+M₀+M₀ʹ)u = M₀ŭ + M₀ʹuʹ + ũ/τ - z + zʹ,
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191 #
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192 # where the primed variables correspond to (2) for (1) for uʹ in place of u:
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193 #
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194 # argmin_uʹ 1/(2τ)|uʹ-ũʹ|^2 + (θ/2)|b⁺⁺-b⁺+<<uʹ-u,∇b⁺>>|^2 + (λ/2)|uʹ-u|^2
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195 #
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196 function horn_schunck_reg_prox_op!(hs::ConstantDisplacementHornSchunckData,
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197 bnext::Image, b::Image, θ, λ, T)
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198 @assert(size(b)==size(bnext))
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199 w = prod(size(b))
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200 z = hs.z
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201 cv = 0
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202 # Factors of symmetric matrix [a c; c d]
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203 a, c, d = 0.0, 0.0, 0.0
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204 # This used to use ∇₂cfold but it is faster to allocate temporary
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205 # storage for the full gradient due to probably better memory and SIMD
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206 # instruction usage.
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207 g = zeros(2, size(b)...)
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208 ∇₂c!(g, b)
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209 @inbounds for i=1:size(b, 1)
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210 for j=1:size(b, 2)
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211 δ = bnext[i,j]-b[i,j]
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212 @. z += g[:,i,j]*δ
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213 cv += δ*δ
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214 a += g[1,i,j]*g[1,i,j]
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215 c += g[1,i,j]*g[2,i,j]
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216 d += g[2,i,j]*g[2,i,j]
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217 end
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218 end
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219 w₀ = λ
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220 w₂ = θ/w
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221 aʹ = w₀ + w₂*a
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222 cʹ = w₂*c
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223 dʹ = w₀ + w₂*d
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224 hs.M₀ .= [aʹ cʹ; cʹ dʹ]
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225 hs.Mv .= [w*λ+θ*a θ*c; θ*c w*λ+θ*d]
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226 hs.cv = cv*θ
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227 hs.av .= hs.z.*θ
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228 hs.z .*= w₂/T
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229 end
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230
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231 # Solve the 2D system (I/τ+M₀)u = z
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232 @inline function mldivide_step_plus_sym2x2!(u, M₀, z, τ)
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233 a = 1/τ+M₀[1, 1]
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234 c = M₀[1, 2]
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235 d = 1/τ+M₀[2, 2]
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236 u .= ([d -c; -c a]*z)./(a*d-c*c)
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237 end
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238
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239 function horn_schunck_reg_prox!(u::DisplacementConstant, bnext::Image, b::Image,
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240 θ, λ, T, τ)
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241 hs=ConstantDisplacementHornSchunckData()
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242 horn_schunck_reg_prox_op!(hs, bnext, b, θ, λ, T)
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243 mldivide_step_plus_sym2x2!(u, hs.M₀, (u./τ)-hs.z, τ)
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244 end
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245
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246 function flow_grad!(x::Image, vtmp::Gradient, u::Displacement; δ=nothing)
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247 if !isnothing(δ)
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248 u = δ.*u
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249 end
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250 pointwise_gradiprod_2d!(x, vtmp, u, x; add=true)
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251 end
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252
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253 # Error b-b_prev+⟨⟨u, ∇b⟩⟩ for Horn–Schunck type penalisation
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254 function linearised_optical_flow_error(u::Displacement, b::Image, b_prev::Image)
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255 imdim = size(b)
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256 vtmp = zeros(2, imdim...)
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257 tmp = b-b_prev
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258 pointwise_gradiprod_2d!(tmp, vtmp, u, b_prev; add=true)
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259 return tmp
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260 end
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261
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262 ##############################################
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263 # Helper to smooth data for Horn–Schunck term
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264 ##############################################
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265
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266 function filter_hs(b, b_next, b_next_filt, kernel)
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267 if kernel==nothing
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268 f = x -> x
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269 else
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270 f = x -> simple_imfilter(x, kernel; threads=false)
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271 end
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272
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273 # We already filtered b in the previous step (b_next in that step)
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274 b_filt = b_next_filt==nothing ? f(b) : b_next_filt
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275 b_next_filt = f(b_next)
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276
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277 return b_filt, b_next_filt
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278 end
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279
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280 end # Module

mercurial